PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00001g00582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 30764.7 Da PI: 6.6052 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 100 | 150 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Peaxi162Scf00001g00582.1 100 TYRGVRKRN-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 150 69****887.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.617 | 100 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-32 | 100 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-34 | 100 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-14 | 100 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-22 | 100 | 158 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-10 | 101 | 112 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.22E-31 | 101 | 159 | No hit | No description |
PRINTS | PR00367 | 1.4E-10 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MKDQLEQINL GTVAQFQHDF SNSSSTTSTS FSSSNYRNSP STTTSSSSSS FHEINTKTQV 60 EYKSKKSSKK IQEFAHNRND HIVENENKRS KNEGHDKHPT YRGVRKRNWG KWVCEIREPR 120 KKSRIWLGTY PTAEMAARAH DVAALAIKGH SAYLNFPYLA DQLPRPTSNS PKDIQVAAAK 180 AAATTFPEES CSGKEIESSL TELHSSCSST NLSSENNQEF IDSPSTENDD TFFNLPDLSI 240 NNMDQKDRIS TWQQVGADVG FWFEEPFLWE SY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 98 | 158 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628141.1 | 1e-106 | PREDICTED: ethylene-responsive transcription factor ERF038-like | ||||
Refseq | XP_016490268.1 | 1e-106 | PREDICTED: ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 1e-57 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1S4BN00 | 1e-105 | A0A1S4BN00_TOBAC; ethylene-responsive transcription factor ERF038-like | ||||
STRING | XP_009628141.1 | 1e-105 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-53 | ERF family protein |
Publications ? help Back to Top | |||
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