PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00001g00534.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | SBP | ||||||||
Protein Properties | Length: 369aa MW: 41436 Da PI: 8.3729 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.3 | 1.5e-40 | 140 | 217 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+h+kap+v++ gleqrfCqqCsrfh++sefDe+krsCrrrLa+hnerrrk+++ Peaxi162Scf00001g00534.1 140 RCQVEGCQVVLVNAKTYHRRHKVCEMHAKAPKVVLLGLEQRFCQQCSRFHSVSEFDESKRSCRRRLAGHNERRRKSSQ 217 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.0E-33 | 138 | 202 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.291 | 138 | 215 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.27E-37 | 139 | 220 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.9E-32 | 141 | 214 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MENGGWNFFS NNNIESCSSN INGGSTTTVG GQISNSTHHA WDFWQLGSSS TNTSLSHDLE 60 WNANNISLSH DPTIRQPQTF NLYNPNLNLN LGNKKHYIEN YEGGREVEGF ATSKRGKPYF 120 CGGGGGDGGA AMPAALVVPR CQVEGCQVVL VNAKTYHRRH KVCEMHAKAP KVVLLGLEQR 180 FCQQCSRFHS VSEFDESKRS CRRRLAGHNE RRRKSSQEHF ANTRNNFQED KPILTGKFRD 240 LPVNEGRALS LLSSNSDSLI PKCNLPARSY SSSIDELIAG SRATSLARQL LLEKDWHRHQ 300 HRQNLSNQPK NTSFTHDCSH VALESHGWGR IDDVAEHLTL NLMHVRNSEF GFLPGQKQPK 360 EEGKEEWCP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-32 | 141 | 214 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625590.1 | 1e-138 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 | ||||
TrEMBL | A0A2K9ZXI7 | 0.0 | A0A2K9ZXI7_PETHY; Squamosa promoter binding-like protein 9c | ||||
STRING | XP_009625590.1 | 1e-138 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13408 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 7e-36 | squamosa promoter binding protein-like 3 |