PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00001g00012.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family CAMTA
Protein Properties Length: 1074aa    MW: 120744 Da    PI: 5.5653
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00001g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.55.8e-54221473118
                      CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg......... 77 
                               +e ++rwl++ ei++iL+n++++++t e++ rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg          
  Peaxi162Scf00001g00012.1  22 SEaQHRWLRPAEICEILQNYRNFHITPEAPYRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGVdslgigvgs 106
                               4449**********************************************************************9999******* PP

                      CG-1  78 vevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                               ++vl+cyYah+ee+ +fqrr+yw+Le++l +iv+vhylevk
  Peaxi162Scf00001g00012.1 107 IDVLHCYYAHGEEDDNFQRRSYWMLEQDLMHIVFVHYLEVK 147
                               **************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.1317152IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-7620147IPR005559CG-1 DNA-binding domain
PfamPF038595.2E-4623146IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.8E-6490577IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.14E-18491577IPR014756Immunoglobulin E-set
PfamPF018339.6E-8491576IPR002909IPT domain
SuperFamilySSF484031.87E-16680782IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.8E-16683784IPR020683Ankyrin repeat-containing domain
CDDcd002041.35E-14686780No hitNo description
PROSITE profilePS500888.79688720IPR002110Ankyrin repeat
PROSITE profilePS5029717.422688782IPR020683Ankyrin repeat-containing domain
SMARTSM002484300688717IPR002110Ankyrin repeat
PROSITE profilePS500889.484721753IPR002110Ankyrin repeat
SMARTSM002480.0036721750IPR002110Ankyrin repeat
SMARTSM002483300760789IPR002110Ankyrin repeat
SuperFamilySSF525406.64E-7891946IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000157.3895917IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.895896925IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041897916IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0016918940IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432919943IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4921940IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1074 aa     Download sequence    Send to blast
MIMAGSGSDP PGFRLDIKQI LSEAQHRWLR PAEICEILQN YRNFHITPEA PYRPVSGSVF  60
LFDRKVLRYF RKDGHNWRKK KDGKTVKEAH EKLKVGVDSL GIGVGSIDVL HCYYAHGEED  120
DNFQRRSYWM LEQDLMHIVF VHYLEVKVRL YNFFPYQGNK ANVSFNRSIE SAHSNYVKEY  180
SLSDTFHGSH KKLASLKADS ASLASTVTSA YEEAESEDSH QVCSRFHSYP EQVSGMDSRL  240
VENRDTISKS YGSPLSSVEY PSLPGIDGGG KCDLGNSASG PQRTNDLGSR APVFERCSNG  300
EVVSTHDFKN NMPVHGNWQY SLEGSPLQFL GQSVNQDLIA DSCYDLLNGF HSENLSSNQY  360
TVRGQSYLYP DEQDEQQTEL NFQNLNSPME VQADIIQENF MDMLGLGDYS TIKQPRLGSV  420
KLEEGLNKSD SFSRWVAKEL EDVEELHMQS TDRLSWNVID IEDDCSCLPS QLHVDSDSLV  480
PSLSQEQLFS IIDFSPNWAY SSLETKVLIT GRFLKSDCKV VECKWSCMFG EVEVPAEVLA  540
DGVLRCHAPP HKPGVLPFYV TCSNRLACSE VREFEYRLGP SREFGASNVS AIEMHLLERF  600
ESVMSLEPVS SCYSSDSPEA APEKQSTVNK IICMMEEDMA DRPSDFDTSQ SKVKEDLFLE  660
RKLRQNFYVW LVHQVTADGK GRTVLDDEGQ GVLHLAAALG YDWALRPILA SGVSVDFRDM  720
NGWTALHWAA FYGREKTVVG LVSLGASPGA LTDPSAEFPL GRTPADLASA NRHKGISGFL  780
AESSLTSHLS KLTVTDAKEE LASEVLGAKV GETVTERVAV TSTGDDVPDV LSLKDSLAAI  840
RNATQAAARI HQIFRVQSFQ RKQIIENNDN ELSSDEHALS VVASRTCKLA QNNGIAHAAA  900
IQIQKKFRGW NRRKEFLLIR QRIVKIQAHV RGHQVRKKYK PIIWSVGILE KVILRWRRKG  960
SGLRGFRSEA VMNKPSTEDD SLPEDDYDFL KEGRKQTEVR MQKALARVKS MTQYPEARAQ  1020
YRRLLTAAEG LRETKEDGPT QVLENQKDAS YAEEDLFDVD NLLDEDTFMS IAFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A1e-13491581993calmodulin binding transcription activator 1
2cxk_B1e-13491581993calmodulin binding transcription activator 1
2cxk_C1e-13491581993calmodulin binding transcription activator 1
2cxk_D1e-13491581993calmodulin binding transcription activator 1
2cxk_E1e-13491581993calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600617.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1S4BAF30.0A0A1S4BAF3_TOBAC; calmodulin-binding transcription activator 2-like isoform X1
STRINGXP_009600617.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]