PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00000g00744.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family DBB
Protein Properties Length: 207aa    MW: 22192.2 Da    PI: 6.3311
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00000g00744.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box186.2e-06447542
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                               C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Peaxi162Scf00000g00744.1  4 QCNVCEAAEARVLCCADEAALCLSCDDKVHAAnklankHQRVPL 47
                              7******99*********************66889999999986 PP
2zf-B_box27.28.2e-095386235
                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                               ++kC+ ++e    +fC +++ llC++C  ++H 
  Peaxi162Scf00000g00744.1 53 PMPKCDICQETVGFFFCLEDRALLCRKCDIAIHT 86
                              689*******9999*******************3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.466147IPR000315B-box-type zinc finger
CDDcd000215.19E-7347No hitNo description
SMARTSM003367.6E-8447IPR000315B-box-type zinc finger
SMARTSM003367.5E-155299IPR000315B-box-type zinc finger
PROSITE profilePS501198.9025299IPR000315B-box-type zinc finger
PfamPF006431.6E-65394IPR000315B-box-type zinc finger
CDDcd000211.19E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKIQCNVCEA AEARVLCCAD EAALCLSCDD KVHAANKLAN KHQRVPLSAS SSPMPKCDIC  60
QETVGFFFCL EDRALLCRKC DIAIHTVNSY VSAHQRFLLT GVRVGLEPIA SAASASSGKS  120
HSIQKAVEQE SPPISKRAAP MSSDATYNNV IPGQAQAEGV GDFAPTRIPL TGGSAAAIIP  180
QWQFDEFLGL TDFNQNYGYM DYGSSKV
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478580.11e-126PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM29e-80BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1S4APU21e-124A0A1S4APU2_TOBAC; B-box zinc finger protein 22-like
STRINGXP_009771048.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.24e-80light-regulated zinc finger protein 1