PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00000g00441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 340aa MW: 38597.3 Da PI: 4.8991 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr p++ r+r +lg+f++aeeAa a++ + +l+g Peaxi162Scf00000g00441.1 109 RYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFDSAEEAAFAYDVEAFRLRG 158 8*******9.**********954...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.54E-34 | 108 | 168 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-22 | 109 | 167 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.67 | 109 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 109 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-11 | 109 | 158 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-31 | 109 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEYVESICKI QATMSIDRGI INPCNDPKQS ILTPSYSRFR FPFSLEDPPS TTNDNQSRMI 60 SFTPQNCFPG YDPAHHHAEV QCWSTSNETL TASSMMNLYG IVSSTTPKRY RGVRQRHWGK 120 WVAEIRLPRK RTRLWLGTFD SAEEAAFAYD VEAFRLRGTD ARLNFPHLFL GRNPSGNDID 180 ETSAESSTSF SKACSEVQHS KTHAHEFQFN RVEDKASSSV GQSVMFHERN YNDSKPDDTD 240 IRQASSDYQD SGDVILEGLF DSTSEKRWNS MDDVWINALR CSSWFPGSPL IGNYSISTDD 300 DYSQQQCDFT VDSGFVDDLL STKDDQIQHA NSTFSSKPLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 108 | 166 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-20 | 108 | 166 | 4 | 63 | ATERF1 |
3gcc_A | 3e-20 | 108 | 166 | 4 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 2e-66 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018624032.1 | 5e-96 | PREDICTED: ethylene-responsive transcription factor ERF042-like | ||||
TrEMBL | A0A314KWB7 | 3e-89 | A0A314KWB7_NICAT; Ethylene-responsive transcription factor erf053 | ||||
STRING | PGSC0003DMT400039576 | 3e-73 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 5e-32 | ERF family protein |