PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9924708g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19514.1 Da PI: 4.9967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.7 | 3.5e-42 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaC++lrr+C+k+C +apyfp ++p+kf vh++FGasn+ k+l++lp ++r+da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+++l MA_9924708g0010 20 PCAACRLLRRRCSKECNFAPYFPRDDPQKFSSVHRIFGASNINKMLQDLPINQRSDAVSSMVYEAHARIRDPVYGCAGAICSLQKQMLELQSQL 113 7********************************************************************************************* PP DUF260 95 allkee 100 al+++e MA_9924708g0010 114 ALAQAE 119 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.935 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-41 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MDESGRPPAD CRKTTEVMSP CAACRLLRRR CSKECNFAPY FPRDDPQKFS SVHRIFGASN 60 INKMLQDLPI NQRSDAVSSM VYEAHARIRD PVYGCAGAIC SLQKQMLELQ SQLALAQAEI 120 MCLRIMQQDA HDDFITDLTE HTMQYPSPDA NDGQQLRSSM FLDDQEAFNL MD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-43 | 14 | 121 | 5 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-43 | 14 | 121 | 5 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019424969.1 | 2e-58 | PREDICTED: LOB domain-containing protein 4-like | ||||
Refseq | XP_021634142.1 | 2e-58 | LOB domain-containing protein 4-like | ||||
Refseq | XP_027911589.1 | 2e-58 | LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 3e-52 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2C9UJM0 | 4e-57 | A0A2C9UJM0_MANES; Uncharacterized protein | ||||
TrEMBL | A0A4D6M8Q9 | 5e-57 | A0A4D6M8Q9_VIGUN; Carbamoyl-phosphate synthase large subunit | ||||
TrEMBL | A0A4P1QQH6 | 5e-57 | A0A4P1QQH6_LUPAN; Uncharacterized protein | ||||
STRING | cassava4.1_021609m | 7e-58 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 4e-40 | LOB domain-containing protein 4 |
Publications ? help Back to Top | |||
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