PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9905g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 330aa    MW: 36570.1 Da    PI: 4.446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9905g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19173223255
           AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GVr ++ +g+++AeIrd    + + +r++lg+f++aeeAa a+++a+ +++g
  MA_9905g0010 173 HYRGVRKRP-WGKYAAEIRDS---NrHGARVWLGTFDSAEEAAMAYDQAAFAMRG 223
                   8********.**********4...3234*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-31172232IPR001471AP2/ERF domain
CDDcd000183.93E-31172231No hitNo description
SMARTSM003803.6E-38173237IPR001471AP2/ERF domain
PROSITE profilePS5103223.275173231IPR001471AP2/ERF domain
PfamPF008477.7E-15173223IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23173233IPR016177DNA-binding domain
PRINTSPR003671.2E-10174185IPR001471AP2/ERF domain
PRINTSPR003671.2E-10197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSSPYESKSS ELNKDPEIWL GNEREESSAL HYLGYDSTHF PGDCNLKGAE SSNPKAEFSE  60
SCMQLALYKP SHDSLIPSVS TPVSLDRGKL EESVTNASME EPKHVQPYAS LSHEFPFDEN  120
DSEEMVLYGV LQEAMSKGWE PVNQASEEKQ EAAAETLAAG EEEKGKSVAV EKHYRGVRKR  180
PWGKYAAEIR DSNRHGARVW LGTFDSAEEA AMAYDQAAFA MRGSRALLNF PLEVVRESVL  240
RNSKYANLFN YAEVAPGCSQ QPSDSKFNDF SISRQEIDRG EGDGHPAEKS KSKSNETTEK  300
LVVELGDLGV DLLEDLLLST TGEQPDRNTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-30172234163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4437231e-149JQ443723.1 Larix decidua isolate AcesapB03 anonymous locus 0_12730_01 genomic sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.17e-28ethylene responsive element binding factor 1