PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9905g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 36570.1 Da PI: 4.446 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 173 | 223 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd + + +r++lg+f++aeeAa a+++a+ +++g MA_9905g0010 173 HYRGVRKRP-WGKYAAEIRDS---NrHGARVWLGTFDSAEEAAMAYDQAAFAMRG 223 8********.**********4...3234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 172 | 232 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.93E-31 | 172 | 231 | No hit | No description |
SMART | SM00380 | 3.6E-38 | 173 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.275 | 173 | 231 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-15 | 173 | 223 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 173 | 233 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-10 | 174 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 197 | 213 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MSSPYESKSS ELNKDPEIWL GNEREESSAL HYLGYDSTHF PGDCNLKGAE SSNPKAEFSE 60 SCMQLALYKP SHDSLIPSVS TPVSLDRGKL EESVTNASME EPKHVQPYAS LSHEFPFDEN 120 DSEEMVLYGV LQEAMSKGWE PVNQASEEKQ EAAAETLAAG EEEKGKSVAV EKHYRGVRKR 180 PWGKYAAEIR DSNRHGARVW LGTFDSAEEA AMAYDQAAFA MRGSRALLNF PLEVVRESVL 240 RNSKYANLFN YAEVAPGCSQ QPSDSKFNDF SISRQEIDRG EGDGHPAEKS KSKSNETTEK 300 LVVELGDLGV DLLEDLLLST TGEQPDRNTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-30 | 172 | 234 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ443723 | 1e-149 | JQ443723.1 Larix decidua isolate AcesapB03 anonymous locus 0_12730_01 genomic sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 7e-28 | ethylene responsive element binding factor 1 |