PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_98506g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARF
Protein Properties Length: 776aa    MW: 85442.7 Da    PI: 7.4969
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_98506g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.5e-23131232199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++       + ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD +vF   ++ +
  MA_98506g0010 131 FAKTLTQSDANNGGGFSVPRYCAETIfprldysSDPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVFL--RSAT 222
                    89****************************995444444..8999*********************************************..4479 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    +el+v+v+r+
  MA_98506g0010 223 GELCVGVRRS 232
                    999****997 PP
2Auxin_resp1058.7e-35309389483
     Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ++++FevvY+Prast+eF+vk+++v ++l++++s+GmRfkm fetedss++++ +Gtv+ v+ +dpv WpnS+Wr+L+
  MA_98506g0010 309 LAVSGQPFEVVYYPRASTPEFCVKAKSVDSSLRIQWSPGMRFKMPFETEDSSRISWfMGTVSFVQFADPVLWPNSPWRLLQ 389
                    67789**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-37122243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29124238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-20130231No hitNo description
PROSITE profilePS5086312.83131233IPR003340B3 DNA binding domain
PfamPF023624.5E-21131232IPR003340B3 DNA binding domain
SMARTSM010196.7E-20131233IPR003340B3 DNA binding domain
PfamPF065075.0E-30308389IPR010525Auxin response factor
PROSITE profilePS5174516.406690770IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MESGEVSIEK GLDPQLWHAC AGGMVQMPSI NSRVYYYPQG HAEHAATVPD FVGNLRMSPS  60
ILCRVVSVKF LADTETDEVY GRMRLVPISD DEQNSSVEDS EAESRPPSPP HTPALNSQTE  120
NANNNHPPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSSDPPVQT VLAKDVHGEV  180
WKFRHIYRGT PRRHLLTTGW STFVNQKKLV AGDAIVFLRS ATGELCVGVR RSTRSTTESH  240
SHSHSPSAWH LPVSGITASP VPSHRVSRWE VKAADYFSGI ATANSNGVTG FSRNRGRVSA  300
KSVIEACALA VSGQPFEVVY YPRASTPEFC VKAKSVDSSL RIQWSPGMRF KMPFETEDSS  360
RISWFMGTVS FVQFADPVLW PNSPWRLLQV TWDEPDILQN VKRVSPWLVE LVSNMPPIQM  420
TPFTLPKKKL RVTQSPDFQL EGQGIMGLQM STVSNNLLRQ INPWHGLSDS VPVGIQGARH  480
DRIYGISLSD FFTNKGQNGL FFKHPSQQEQ GVMSTPVCTE LNIGNSPQND GSGMQSSPSS  540
LLTVGNSSQN EQKTSSGSAS SSTPKGSSFF LFGKPIHTAP SPKSYQQHQS GLSSSDGAAF  600
HMFTENGSPG QSSNTSSNGN QEALERVQKL ITGGRDGTKL SENYGLRLSH GESLDYAGTK  660
GVRSLQWFKD QASILKLEKD KQENTCEDSI VHCKVFKETE EVGRTLDLSL FCTYEQLYDR  720
LAKMFGIEES ELSNRVLYKG LGGSVRHAGD EPYKDFMKTV RRLTILSDSG SDNMAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-731241051388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1194960.0BT119496.1 Picea glauca clone GQ04106_G13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624034.10.0auxin response factor 18
TrEMBLA0A0D6QZZ40.0A0A0D6QZZ4_ARACU; Auxin response factor
STRINGERN077010.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16