PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_98464g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 433aa    MW: 47990.8 Da    PI: 8.151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_98464g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.5e-16234278856
            AP2   8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    w++ +g+WvAeIr p++   r r +lg+f+tae+Aa a+++a+ +l+ge
  MA_98464g0010 234 WRH-WGKWVAEIRLPRN---RSRLWLGTFDTAEQAALAYDRAAYRLRGE 278
                    788.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.07E-30221285No hitNo description
SMARTSM003805.7E-32222291IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17222285IPR016177DNA-binding domain
PROSITE profilePS5103222.8222285IPR001471AP2/ERF domain
PfamPF008474.1E-9223278IPR001471AP2/ERF domain
PRINTSPR003671.1E-10223234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-25235285IPR001471AP2/ERF domain
PRINTSPR003671.1E-10251267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAEATGFPLH TLSSRPLCSD PISLGVESMK VVESVVKQSR IETSQSPKSN PSSTSTLVDF  60
CKFIRRPDDN YAVDIFNPNV TNHELHHVGS GIASNFCNLY SELHSHDDSN GRDSLPWPCP  120
SFGGLEGNTN QQQFVNFHAG NHSELQPMAD CCQLTPSEIQ LQLLQRQGEI EQLQWLTSVV  180
SAPKPKLGHR RDATNSLGLR PWPMKHACKQ GLRLCSNQPT KLYRGVRQRH WGKWRHWGKW  240
VAEIRLPRNR SRLWLGTFDT AEQAALAYDR AAYRLRGEYA RLNFPGLKQQ QQLSHGSHSL  300
SPSSTSNLHS ITDIRNQSGL LSVLQSAVDA KLQAICERSS ASTKPSHEGK LGHNSLNQKI  360
SAVTPCKEKS PFEVKSECPE FSGGDNNQVF AAHNSDSALP CKSMTDAVCN MPSISASASA  420
LATTWTDVEE WIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20221285160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1003650.0BT100365.1 Picea glauca clone GQ0011_L04 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-26ERF family protein