PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9839150g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 19804.4 Da PI: 5.2063 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.1 | 5.4e-42 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C ++Cvlapyfp+++ +kfa +h++FGasn++kll++lp e+r+da+ss+vyeA+ar+rdP yG++g+++++q+ql+ql+++l MA_9839150g0010 15 PCAACKILRRRCGEKCVLAPYFPSNDLHKFATAHRIFGASNIIKLLQELPAERRTDAVSSMVYEANARLRDPLYGCAGIVFQMQSQLSQLQSQL 108 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e MA_9839150g0010 109 ATAQAE 114 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.841 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-41 | 15 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MASNVGGFRD HAPSPCAACK ILRRRCGEKC VLAPYFPSND LHKFATAHRI FGASNIIKLL 60 QELPAERRTD AVSSMVYEAN ARLRDPLYGC AGIVFQMQSQ LSQLQSQLAT AQAEILTMRL 120 QQANLLALIT GSADSGETTR PLSPSSSAIS QESNDQQTDL IYFEGEDPLQ LWDDSVWTQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-39 | 14 | 116 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-39 | 14 | 116 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF084557 | 0.0 | EF084557.1 Picea sitchensis clone WS0271_N08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019227600.1 | 4e-64 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 8e-58 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A9NTB0 | 1e-129 | A9NTB0_PICSI; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P15500_001 | 3e-62 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-50 | LOB domain-containing protein 1 |