PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_9826431g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 182aa MW: 20833.8 Da PI: 5.6833 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 219.8 | 1.4e-67 | 1 | 181 | 193 | 373 |
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +L+++p+EalaVn+++qlh++ldesvs++++rd++L +vksl+Pkvv+v+eqe+++n+++Fl +f+e l+yys++fdsl+a+l+res++r++vE MA_9826431g0010 1 MLNINPDEALAVNFAFQLHHMLDESVSTKNPRDRLLMMVKSLNPKVVTVAEQEVKTNTAPFLPQFMEVLNYYSSVFDSLDATLSRESRDRVNVE 94 699******************************************************************************************* PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++l+r+ivn++aceg+er+er e ++kWr+r+++ GF+++pls ++ +++k+ll++ + + y+ +ee g++++gW dr L+++SaW MA_9826431g0010 95 KQCLARDIVNIIACEGEERIERYEVAGKWRARMTMEGFSAYPLSANVKDTVKSLLHQSYCNSYKTNEEGGTMYFGWLDRILIAASAW 181 ***********************************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.079 | 1 | 162 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-65 | 1 | 181 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MLNINPDEAL AVNFAFQLHH MLDESVSTKN PRDRLLMMVK SLNPKVVTVA EQEVKTNTAP 60 FLPQFMEVLN YYSSVFDSLD ATLSRESRDR VNVEKQCLAR DIVNIIACEG EERIERYEVA 120 GKWRARMTME GFSAYPLSAN VKDTVKSLLH QSYCNSYKTN EEGGTMYFGW LDRILIAASA 180 WH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-28 | 4 | 182 | 197 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT106412 | 0.0 | BT106412.1 Picea glauca clone GQ03001_C01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526667.1 | 2e-90 | scarecrow-like protein 1 | ||||
Refseq | XP_003526668.1 | 2e-90 | scarecrow-like protein 1 | ||||
Refseq | XP_014631848.1 | 2e-90 | scarecrow-like protein 1 | ||||
Refseq | XP_014631849.1 | 2e-90 | scarecrow-like protein 1 | ||||
Refseq | XP_014631850.1 | 2e-90 | scarecrow-like protein 1 | ||||
Refseq | XP_028235982.1 | 2e-90 | scarecrow-like protein 1 | ||||
Refseq | XP_028235983.1 | 2e-90 | scarecrow-like protein 1 | ||||
Refseq | XP_028235984.1 | 2e-90 | scarecrow-like protein 1 | ||||
Refseq | XP_028235985.1 | 2e-90 | scarecrow-like protein 1 | ||||
Refseq | XP_028235986.1 | 2e-90 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 9e-83 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A0B4U7X1 | 1e-119 | A0A0B4U7X1_PINRA; SCL7 (Fragment) | ||||
STRING | GLYMA06G12701.1 | 6e-90 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10802 | 2 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21450.1 | 4e-85 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|