PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_98243g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 423aa    MW: 46286.7 Da    PI: 9.647
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_98243g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.92.6e-1839127186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeev....skkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+++ + +L++a++e+  +l+rg+l++ +Weev    s+++++++ ++s +qCk+k +nl+kryk ++++ ++++  ++s++p++++++
  MA_98243g0010  39 EWSDSAIGCLLDAYTEKYVKLNRGNLRGRDWEEVacivSERCERQKSSKSIEQCKNKVDNLKKRYKSERHRLISGS-ATVSHWPWYKKMD 127
                    5********************************822225666********************************95.5666********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-2037129No hitNo description
Gene3DG3DSA:3.40.1160.103.6E-81178416IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536334.19E-64183416IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B38.315183417IPR015963Uridylate kinase, bacteria
TIGRFAMsTIGR020751.9E-83186416IPR015963Uridylate kinase, bacteria
CDDcd042541.58E-131186417No hitNo description
PfamPF006961.1E-26187396IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MKDSREELSD GGTYYHKKPK GGGGGGGGGG GDYKKDREEW SDSAIGCLLD AYTEKYVKLN  60
RGNLRGRDWE EVACIVSERC ERQKSSKSIE QCKNKVDNLK KRYKSERHRL ISGSATVSHW  120
PWYKKMDQIV GSSVSKAVSD EDKSMGGTNS AMNMARPAKR FAVVTPSPVG LSNNLKTKTL  180
QTPRWRRVLL KISGTALAGN AQNVDPKVTS LIAREIAAVN RLGVEVAIVV GGRNFFCGTS  240
WVRSTGLDRA SADQIGMMAT VMNSIILQAD MENLGIQTRV QTAFKMSEIA EPYIRRRAIR  300
HLEKGRVVIF GAGTGNPFFS TDTAAALRAS EINAEVVLKG TNVDGVYDCD PRKNNNVILD  360
HISYRDFVTK GLQATAMDLT AITFCEENCI PVVIFNLHEP GNISRALTGE QIGTLIDQTG  420
KIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A3e-7318141646279Uridylate kinase
3nwy_B3e-7318141646279Uridylate kinase
3nwy_C3e-7318141646279Uridylate kinase
3nwy_D3e-7318141646279Uridylate kinase
3nwy_E3e-7318141646279Uridylate kinase
3nwy_F3e-7318141646279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1184600.0BT118460.1 Picea glauca clone GQ04006_K06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278264.10.0PREDICTED: uncharacterized protein LOC104612522 isoform X1
SwissprotQ2JS424e-89PYRH_SYNJA; Uridylate kinase
TrEMBLA0A0D6R6P90.0A0A0D6R6P9_ARACU; Uncharacterized protein
STRINGXP_010278264.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-178Trihelix family protein