PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_98095g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 818aa    MW: 90537.5 Da    PI: 6.4846
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_98095g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.4e-15384443155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  MA_98095g0010 384 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 443
                    78*******************655454478446*************************98 PP
2AP2476.5e-15486537155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MA_98095g0010 486 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 537
                    78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.24E-22384451No hitNo description
PfamPF008478.5E-12384443IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17384453IPR016177DNA-binding domain
PROSITE profilePS5103219.269385451IPR001471AP2/ERF domain
SMARTSM003801.4E-29385457IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-16385452IPR001471AP2/ERF domain
PRINTSPR003677.5E-6386397IPR001471AP2/ERF domain
CDDcd000182.67E-24486547No hitNo description
SuperFamilySSF541712.48E-17486547IPR016177DNA-binding domain
PfamPF008479.3E-10486537IPR001471AP2/ERF domain
PROSITE profilePS5103218.913487545IPR001471AP2/ERF domain
SMARTSM003803.6E-33487551IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-18487545IPR001471AP2/ERF domain
PRINTSPR003677.5E-6527547IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MKHMNNWLAF SLSPHLAIDV GNTTQAQAQA SSNTTCYAVN NSNEVPQSTM GYQSSAECYG  60
INAANGHFSS QMSELPLRSD GSLCIMEALG RSQSANWHLK HLDASRSLQS DGSGLQSSQQ  120
LLNRELPRFS RNNGTDHHMP RSSQYDNNMP PQNGSEREGP KLEDFLGGAS LGNQYSTNHE  180
THSQASLDGM YYAGAGFHRE HNNEKINVNL PFMQCRQREV PSPWIDSQSY EAQPRSLQMQ  240
QEHHDLCEFV QESQQMPFHV QLDPNSNDTM FADCSLQLPP GSGMVGLSAL KTWLRQNPSN  300
ADHHKVPSGP GSPGKSNLGG GLGDFQSLTL SMSPGSQTSS AIISQPTIID QCNPVETKKR  360
GAGKSGIREP VPRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY  420
LGGYDKEEKA ARAYDLAALK YWGPSTHINF PLETYEKEIE EMKNMTRQEY VANLRRKSSG  480
FSRGASVYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGISA  540
VTNFDISKYD VQRICSSSTL IAGDLAKRTK EIEQSSEPSG DSPLQVEAAP LQIEAAHNSQ  600
SRSHNDNAKD GNNSTSNDSN HNNNVVGSMS DKIAQDWQLM DSNSDQDQHK VFNNWVVEHE  660
DRKPDQSFIE SLQLGPHSHS AVLHDLIGLD SSTAADSDQS NNEETSRLLT DISGGNNSLL  720
TMSNASNTGP VESPVNSASE NEEGHHRKIP VYDNMMPAGE FPQALFFSSP QQASKLVKYE  780
NGSTTLSPWM IPPNTVQPLQ SRPNLSVGHL PMFALWNE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1015850.0AB101585.1 Pinus thunbergii PtANTL1 mRNA for AINTEGUMENTA-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625364.21e-178AP2-like ethylene-responsive transcription factor ANT
TrEMBLQ76H960.0Q76H96_PINTH; AINTEGUMENTA-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-125AP2 family protein