PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_98008g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 386aa    MW: 43159.1 Da    PI: 5.5321
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_98008g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.84.5e-32121491128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWka 85 
                    lp+G++F+Ptdeel+  +L +k+ + +      ++++   ++e  +i++++P +Lp  vk++ ++++ F+k++k+y+tg rk+r+++   + +W++
  MA_98008g0010  12 LPAGVKFEPTDEELL-GHLSAKLGTGNaqphpfIDEFILtLEEEnGICYTHPGNLP-GVKQDGSSVHIFHKTAKAYTTGPRKRRKVQsrgNVRWHK 105
                    799************.789999988886776664444444666658**********.7788899********************655444567*** PP

            NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    tg +++v++ +g+++g+kk++v+y  + + +k+ekt+Wvmh+y+l
  MA_98008g0010 106 TGVTRAVYE-NGKQKGCKKIMVLYmtSVKGSKPEKTKWVMHQYHL 149
                    *********.999***********7645777777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-345168IPR003441NAC domain
PROSITE profilePS5100529.91312168IPR003441NAC domain
PfamPF023659.3E-1413149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGNEVTQEWP GLPAGVKFEP TDEELLGHLS AKLGTGNAQP HPFIDEFILT LEEENGICYT  60
HPGNLPGVKQ DGSSVHIFHK TAKAYTTGPR KRRKVQSRGN VRWHKTGVTR AVYENGKQKG  120
CKKIMVLYMT SVKGSKPEKT KWVMHQYHLG IDEDEKEGEF VVSKIFYQQE KSCHKNDPDI  180
PQEDVGPSIG KGDPVTPKTR TPPLRSWNQH AYLDGVKEEH LHCPLSPQAA DPDATIHQHS  240
EGNEAESDRQ NDLPNETAGS AWSAGESQLL EDSQEPINHS LACNEILENR SCEANIEGGN  300
CMPPGLTECG RIKRNELEKE LHPFAPSELE NIDLDTPPDV LITDSQISSQ ESIWHLTWVI  360
VNERHNDLIH PGYVQKSLCF GKESYS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1186151e-135BT118615.1 Picea glauca clone GQ04008_D09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627944.11e-102SUPPRESSOR OF GAMMA RESPONSE 1 isoform X4
RefseqXP_020531157.11e-102SUPPRESSOR OF GAMMA RESPONSE 1 isoform X3
RefseqXP_020531159.11e-102SUPPRESSOR OF GAMMA RESPONSE 1 isoform X5
TrEMBLB8LLI01e-133B8LLI0_PICSI; Uncharacterized protein
STRINGERM958161e-102(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-78NAC family protein