PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9785986g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 186aa    MW: 20676 Da    PI: 4.4774
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9785986g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-162372255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++kG+r +k +g+Wv+eIr p++   r++++lg+++++e+Aa+a++ a  +l+g
  MA_9785986g0010 23 QFKGIRLRK-WGKWVSEIRMPNS---RAKIWLGSYDSPEKAARAYDFAVYCLRG 72
                     69*****99.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-272282IPR001471AP2/ERF domain
PROSITE profilePS5103220.9162380IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-192382IPR016177DNA-binding domain
CDDcd000181.83E-262382No hitNo description
SMARTSM003804.0E-292386IPR001471AP2/ERF domain
PfamPF008471.2E-92472IPR001471AP2/ERF domain
PRINTSPR003671.1E-72435IPR001471AP2/ERF domain
PRINTSPR003671.1E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGKPLPKQST HRGPENSPSK SRQFKGIRLR KWGKWVSEIR MPNSRAKIWL GSYDSPEKAA  60
RAYDFAVYCL RGSKAAFNFP DSPPEIPCAS SLSPPQIQAA AARFATEDFR PPSEDDAASS  120
SSPSEAESCI DDQQISAEQG PAFWDSLLLE DLDSGESLNL EDFPPLYFSM DDFGVLFDQT  180
KDWGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-131980163ATERF1
3gcc_A1e-131980163ATERF1
5wx9_A2e-131380472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0815890.0EF081589.1 Picea sitchensis clone WS0278_D08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NK161e-124A9NK16_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-39ERF family protein