PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_97786g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 344aa    MW: 38747.5 Da    PI: 6.3737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_97786g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.4e-14114157855
                    HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     Er RR++++s f++L +llP++      K +K++i+e+A+ YIk Lq
  MA_97786g0010 114 TERERRKKMRSMFSNLHSLLPHL----PAKADKSTIVEEAISYIKTLQ 157
                    6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-15110167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.71E-13111161No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14111167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9114162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-11114157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMAQFRMNYN CSDNHLGEQD HEKYKLQSIN IAQDIDSLSN DLQEQYHMEY CNRQESVTEP  60
NLDHDQASAG CKPREPKSID HKKSAQALKL GELGLGNSLM KSIEPEDQGI HIWTERERRK  120
KMRSMFSNLH SLLPHLPAKA DKSTIVEEAI SYIKTLQQSL HVLENQRLDK ARAASTLEFE  180
LSSTFHEMQQ QHHVSTATMR SASEAPAFYH PLTAECSASS GFEPWISRQY SRTISTGSPA  240
IDHCFFQTWS SPNVVLSVCG DDAHMMICSS PPKQGLLTTI FYTLEKHKVD VVTAHISSDS  300
CRSMYMIHAQ AHAMVNGGDQ FLESKASEEA FRSAAGELVF YLSS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0834860.0EF083486.1 Picea sitchensis clone WS02718_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQC20.0A9NQC2_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-45bHLH family protein