PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_97411g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 23092.8 Da PI: 5.2274 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.3 | 2.1e-37 | 7 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf++e+ + +f ++hk+FGasn +k+l +lp ++r da+ s++yeAear++dPvyG+v++i++lqqq+++lk +l MA_97411g0010 7 PCGACKFLRRKCVKGCVYAPYFCSEEmgAPHFGAIHKVFGASNFSKMLMHLPIQQRYDAVVSVLYEAEARLQDPVYGCVSHINALQQQVANLKRKL 102 7***********************995569***************************************************************999 PP DUF260 95 al 96 a+ MA_97411g0010 103 AV 104 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.281 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-35 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGGGGAPCGA CKFLRRKCVK GCVYAPYFCS EEMGAPHFGA IHKVFGASNF SKMLMHLPIQ 60 QRYDAVVSVL YEAEARLQDP VYGCVSHINA LQQQVANLKR KLAVGYAQLA ACSNSDGASV 120 SLEYRYGMQS EMPSLTSNSN SSSPYDQQYL NPWGHPQLIR SDNVAIDSYI EEASEEEGSW 180 NNFSVCMQGG NHPLPTAQET NVFQDAETLS E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-39 | 3 | 122 | 7 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-39 | 3 | 122 | 7 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021814837.1 | 2e-51 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 2e-48 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A498J1I9 | 1e-49 | A0A498J1I9_MALDO; Uncharacterized protein | ||||
STRING | XP_008235796.1 | 9e-51 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 7e-50 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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