PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_97259g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Dof

Protein Properties

Length: 282aa MW: 31358.8 Da PI: 8.7208

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_97259g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.2	1.4e-36	75	132	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++k ++cprC+s++tkfCy+nny+++qPr++C+ C+ryWt+GG+lrnvPvG+grrknk MA_97259g0020 75 PTKLVPCPRCESMDTKFCYFNNYNVNQPRHYCRRCQRYWTAGGSLRNVPVGAGRRKNK 132 67889****************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	64	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-30	78	132	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.071	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MPKFEGKSAK SLDSTFKLFG RTIAVKNPCD SSSNGIHVDG IPAEAANSVV SKASETHRDE 60 KQKQNEDSEK VGKKPTKLVP CPRCESMDTK FCYFNNYNVN QPRHYCRRCQ RYWTAGGSLR 120 NVPVGAGRRK NKPCFGIHHR QIMDDTESVW SDGQGQTSRG NSDKLVKVEP FYPEFDNFRE 180 GLNEAATPTE GNSKPQSQIQ SQFDDYSHPS TLNLPKEKVA KEVLFGSGNQ VGAMGWPGNS 240 THLAKEPGNF THLAKEPGNF THLAKELESA QKPSCSQGNY RD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC688682	0.0	KC688682.1 Pinus pinaster Dof8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T2B8A9	0.0	T2B8A9_PINPS; Dof8

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	2e-37	cycling DOF factor 1