PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_96911g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-YB | ||||||||
Protein Properties | Length: 220aa MW: 23816.2 Da PI: 8.6092 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 186.7 | 1.7e-58 | 32 | 128 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 v+eqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+kyrelege MA_96911g0010 32 VKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMGTLGFENYVEPLKVYLQKYRELEGE 127 58*********************************************************************************************9 PP NF-YB 97 k 97 k MA_96911g0010 128 K 128 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.6E-56 | 27 | 144 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.99E-42 | 35 | 143 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.0E-28 | 38 | 102 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.3E-22 | 66 | 84 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 69 | 85 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.3E-22 | 85 | 103 | No hit | No description |
PRINTS | PR00615 | 7.3E-22 | 104 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MATTRHQRSP DSSPRSEDES GAHTYSNQDG SVKEQDRFLP IANVSRIMKK ALPANAKISK 60 DAKETVQECV SEFISFITGE ASDKCQREKR KTINGDDLLW AMGTLGFENY VEPLKVYLQK 120 YRELEGEKTS MAKQSGDQSP SKDASSGSTV NGSSAGNPSI SPGSSAKYSG GYYPQAYGGQ 180 AAQRYGQHQM LTPYQMHINT GKAGGAGAAN SGDHHPRGQW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 8e-49 | 32 | 123 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 8e-49 | 32 | 123 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117631 | 0.0 | BT117631.1 Picea glauca clone GQ03905_K02 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384928.1 | 7e-79 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_024384929.1 | 7e-79 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_024384930.1 | 7e-79 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_024384931.1 | 7e-79 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_024384932.1 | 7e-79 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 1e-68 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A9NL76 | 1e-162 | A9NL76_PICSI; Uncharacterized protein | ||||
STRING | PP1S302_35V6.6 | 3e-78 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 8e-70 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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