PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_96671g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 41095.8 Da PI: 6.2403 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8.3e-10 | 210 | 256 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 h+++Er RR++i+++++ L++l+P + +K K iL + ++Y+ksLq MA_96671g0010 210 HSIAERARREKIRKRMNYLQDLVPGC-----GKgTGKTVILDEIINYVKSLQ 256 9*************************.....5669****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-16 | 203 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.37E-9 | 203 | 260 | No hit | No description |
PROSITE profile | PS50888 | 14.564 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-16 | 206 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-7 | 210 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.9E-9 | 211 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MAAFSHKSPD DNYLLSTGHN CGISDTSLPS RVPKLTFIQP SVDFHTTSPL TVSAASYSLE 60 PQYSYPGTNT VVARETEEYS LQKLDSREID EDIHKLFVET NVFGIDELYS NNIPPDVSMI 120 FDEAIATTDS KEVVEDKRRK NNRVDYRACR INSRMATAIK PCSSSAASTK EKTYKGKQIT 180 ESSPKQSTMP EPAKDFVLVR ARRGQATDRH SIAERARREK IRKRMNYLQD LVPGCGKGTG 240 KTVILDEIIN YVKSLQNQVE FLSMKLSAAS PRYDFSLEPG NHDLGYTEAR PAQEYCGGTV 300 QGSTPDEQLA MVFDPSTDAS CFTFAQESTE ADECDPQLQL HSLVHGRLRQ QDRNHEMAHV 360 LGFSQHH |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118980 | 0.0 | BT118980.1 Picea glauca clone GQ04012_P10 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-28 | bHLH family protein |