PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_96512g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 376aa    MW: 42230.5 Da    PI: 6.1115
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_96512g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1877125355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y G+r+++ +g+W+AeIrdp+    r+r++lg+f+tae+Aa+a++aa+ +++g
  MA_96512g0020  77 YIGIRQRP-WGKWAAEIRDPKV---RARVWLGTFDTAEDAARAYDAAAWRIRG 125
                    89******.**********943...6**********************88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-1276125IPR001471AP2/ERF domain
PROSITE profilePS5103223.35476133IPR001471AP2/ERF domain
SMARTSM003806.4E-3276139IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2176134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-3076134IPR001471AP2/ERF domain
PRINTSPR003671.7E-107788IPR001471AP2/ERF domain
CDDcd000187.69E-1977135No hitNo description
PRINTSPR003671.7E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSDSSVAENQ LVEQENPQAF CSACVHGCLR STTECRRGHK VESRCLTLAH SQLSTSSGNR  60
KMSKRRKGGK RNKKYVYIGI RQRPWGKWAA EIRDPKVRAR VWLGTFDTAE DAARAYDAAA  120
WRIRGKKAKL NFSDVHRAVD TDLNAESGSS VSNLVSDDYT ANAKTHDAVD GMKKMEEETQ  180
NVGDHAAASS CMNMWNTGEW IDYSPVEVLA ASVDMDFSLQ YDDWAWSSCQ EVGVDDLEES  240
VLENGSITAR LKFSEHLWTW ILVCSMMIGH GVHGEWIDCS SVEVPLGHGV HGEWIYYSPV  300
EVLIRHGVHG EWIDYSLVEV EVLGAAMYMD FSLQYDIGHG VHVKKLVLRT WKNRISMGCF  360
ISGCSTNDNN VLLFYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2177132359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1194920.0BT119492.1 Picea glauca clone GQ04106_F17 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-19ERF family protein