PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_962403g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 285aa MW: 30443.8 Da PI: 7.6978 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.2 | 7.4e-40 | 11 | 112 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll+++p +r +a+ +++yeA+ar+rdPvyG+vg+i lq+q+++l++el MA_962403g0010 11 PCGACKFLRRKCVSGCIFAPYFDSDQgAAHFAAVHKIFGASNVSKLLQNIPVPKRCEAVVTICYEAQARLRDPVYGCVGHIYFLQHQVKSLQSEL 105 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 ++++l MA_962403g0010 106 TNVQAQL 112 *999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.688 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-39 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSGGGGGGGA PCGACKFLRR KCVSGCIFAP YFDSDQGAAH FAAVHKIFGA SNVSKLLQNI 60 PVPKRCEAVV TICYEAQARL RDPVYGCVGH IYFLQHQVKS LQSELTNVQA QLATRLQAAA 120 SLQQAHHHGH SESCLSSAAS TGYAGTSNSP YDHHHHQLQD HAAPLSMSFH VPAAASSPAA 180 AATHAHVNPY TDRLKEESAA ASSFNALTYA QHVHSISPLQ VEPGSFCSTV QQQMQDAFLR 240 NRNNIHLMDQ QHNDSDQTGG GGELQALAHE LLRRNHGAKP HSTSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-37 | 7 | 112 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-37 | 7 | 112 | 7 | 111 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021657345.1 | 3e-58 | LOB domain-containing protein 19-like | ||||
Swissprot | Q9SLB7 | 2e-53 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | D5A9D3 | 1e-61 | D5A9D3_PICSI; Uncharacterized protein | ||||
STRING | XP_007134896.1 | 1e-56 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 5e-50 | LOB domain-containing protein 20 |