PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_960494g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bZIP | ||||||||
Protein Properties | Length: 232aa MW: 25538.9 Da PI: 9.7531 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.8 | 5.5e-14 | 30 | 77 | 10 | 57 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 k +NRe+ArrsR+RK+a + Le v++L eN++L k+ e++++++ MA_960494g0010 30 KLSNRESARRSRRRKQAHLNDLEIQVAQLRVENSSLFKRFTEINQKYS 77 679************************************999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00170 | 4.0E-11 | 30 | 76 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.38E-10 | 30 | 75 | No hit | No description |
SMART | SM00338 | 8.5E-9 | 30 | 85 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 30 | 43 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 30 | 75 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.5E-9 | 31 | 76 | No hit | No description |
Pfam | PF12498 | 1.1E-15 | 92 | 208 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MIYSQLSIVE IAIIVDLFNV SMSFFMGGGK LSNRESARRS RRRKQAHLND LEIQVAQLRV 60 ENSSLFKRFT EINQKYSGAS VDNRVLKSDV EALRAKVKMV ESMVPKAATA GFPFQNTSQV 120 QSAVSLRYTT GIFDSPATNV LQGEDGLYMN TAQSTGTGGS SLSCAISDMN QQNKELQIQH 180 TGSKMGRTPS MQRVASLEHL QKRIRGGITC GSMPWGGAWD VDGSQVMEHS EH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 44 | RRSRRRKQ |
2 | 39 | 44 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113584 | 0.0 | BT113584.1 Picea glauca clone GQ03414_B24 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011621614.1 | 4e-41 | light-inducible protein CPRF2 isoform X1 | ||||
Swissprot | Q99090 | 5e-35 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A0C9QWW3 | 2e-87 | A0A0C9QWW3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_2503_1784 transcribed RNA sequence | ||||
STRING | ERN01458 | 7e-39 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1839 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.1 | 1e-31 | bZIP family protein |
Publications ? help Back to Top | |||
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