PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_95898g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 316aa MW: 35624 Da PI: 9.0676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_95898g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.7	6.9e-34	48	191	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk. 79 lp G++F+Ptd+el+ e+L+ kv+ ++ ++++ i +i++++P++Lp ++ + +fF++ +k+y+tg+rk+r+ t+ MA_95898g0010 48 LPYGVKFDPTDQELI-EHLQGKVAFDNsaahplIDEFIPtIGGEdGICYTHPEKLP-GISRDGLIRHFFHRPSKAYTTGTRKRRKiqtacdesTEg 141 699**********.99998886665443332223554436******.555555677**************867777776334 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l MA_95898g0010 142 ETRWHKTGKTRPVLV-NGKQKGCKKILVLYtnFGKHKKPEKTNWVMHQYHL 191 778********.999*******554799999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.29E-39	35	210	IPR003441	NAC domain
PROSITE profile	PS51005	33.19	48	210	IPR003441	NAC domain
Pfam	PF02365	9.7E-16	49	191	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MLMAGKIRNS TSSSQLIDAK LEEYRIKRCP ACGHQIERRE ALQDWPGLPY GVKFDPTDQE 60 LIEHLQGKVA FDNSAAHPLI DEFIPTIGGE DGICYTHPEK LPGISRDGLI RHFFHRPSKA 120 YTTGTRKRRK IQTACDESTE GETRWHKTGK TRPVLVNGKQ KGCKKILVLY TNFGKHKKPE 180 KTNWVMHQYH LGSQEEEKEG ELVVSKIFYQ TQPRQCNWEK ATYAGDACRA SVTEATQVSE 240 RCTAGESVSS TARHTYNHLE QQTKGTNSSH NLSLAQSRLE SSDQGIDSRS PESTRCTPSF 300 GRGIVGLHRN KDLRVS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106946	0.0	BT106946.1 Picea glauca clone GQ03101_A16 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010321139.1	1e-121	NAC domain-containing protein 75 isoform X2
Refseq	XP_015074957.1	1e-121	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-121	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	E0ZFA1	1e-150	E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRING	PGSC0003DMT400043521	1e-120	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP525	15	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-123	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]