PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_95754g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 90aa MW: 9908.77 Da PI: 10.4776 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 125.8 | 1.4e-39 | 26 | 90 | 6 | 70 |
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + +G+nPGlivllvv g+llvf+vgny+ly+yaqk+lPP+kkkPvskkk+kreklkqG+++PGe MA_95754g0010 26 AAGRGFNPGLIVLLVVVGVLLVFIVGNYVLYMYAQKTLPPKKKKPVSKKKMKREKLKQGISAPGE 90 4569************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.7E-38 | 27 | 90 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MEEDFSSQAD IDPSAFASQE RLLTKAAGRG FNPGLIVLLV VVGVLLVFIV GNYVLYMYAQ 60 KTLPPKKKKP VSKKKMKREK LKQGISAPGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118304 | 1e-151 | BT118304.1 Picea glauca clone GQ04004_N22 mRNA sequence. | |||
GenBank | EF084567 | 1e-151 | EF084567.1 Picea sitchensis clone WS02720_J04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104121.2 | 1e-26 | DNA-binding protein S1FA | ||||
Refseq | XP_024026346.1 | 1e-26 | DNA-binding protein S1FA | ||||
Swissprot | P42553 | 8e-15 | S1FA1_ORYSJ; DNA-binding protein S1FA1 | ||||
TrEMBL | A9NTB9 | 2e-57 | A9NTB9_PICSI; Uncharacterized protein | ||||
STRING | XP_010104121.1 | 3e-25 | (Morus notabilis) |