PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_95225g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 384aa MW: 44453.5 Da PI: 7.6349

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_95225g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.4	3.4e-50	34	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +e+ew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++ MA_95225g0010 34 LMPGFRFHPTEEELVEFYLRRKVEGKHFNI-ELITLIDLYRYDPWELPAFASLGENEWFFYVQRDRKYRSGDRPNRVTTSGYWKATGADRMIRNEV 128 689*************************.89***********8777899************************************9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfykg+apkg++t+W+m+eyrl MA_95225g0010 129 SRSIGLKKTLVFYKGKAPKGKRTSWIMNEYRL 160 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-54	27	181	IPR003441	NAC domain
PROSITE profile	PS51005	55.534	34	181	IPR003441	NAC domain
Pfam	PF02365	4.1E-25	36	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MTFAAKNLPT SSYSMKDKEK KAVESSFKHD QDVLMPGFRF HPTEEELVEF YLRRKVEGKH 60 FNIELITLID LYRYDPWELP AFASLGENEW FFYVQRDRKY RSGDRPNRVT TSGYWKATGA 120 DRMIRNEVSR SIGLKKTLVF YKGKAPKGKR TSWIMNEYRL PQVETQTTQK NELSLCRVYK 180 RPGVSEEERL RAKKRHNGIE NETISVNGNH DLSCSVAIQE RTSMHQCQTY RACSKPRTTA 240 ESCNFEIKTG TKDEIVKFEE LPTDIKIMPK STIEEERLGD HMEYGLPNQL EDIQERIYSL 300 GRNVWNTVSC PISLNEDIEL PLMTTCLMCP RTPDQLAMAE DLYNSNLSYL VLTNALTYGA 360 CLPTCSDKLW EWNPVRNNGN GPSC

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MTFAAKNLPT SSYSMKDKEK KAVESSFKHD QDVLMPGFRF HPTEEELVEF YLRRKVEGKH  60
FNIELITLID LYRYDPWELP AFASLGENEW FFYVQRDRKY RSGDRPNRVT TSGYWKATGA  120
DRMIRNEVSR SIGLKKTLVF YKGKAPKGKR TSWIMNEYRL PQVETQTTQK NELSLCRVYK  180
RPGVSEEERL RAKKRHNGIE NETISVNGNH DLSCSVAIQE RTSMHQCQTY RACSKPRTTA  240
ESCNFEIKTG TKDEIVKFEE LPTDIKIMPK STIEEERLGD HMEYGLPNQL EDIQERIYSL  300
GRNVWNTVSC PISLNEDIEL PLMTTCLMCP RTPDQLAMAE DLYNSNLSYL VLTNALTYGA  360
CLPTCSDKLW EWNPVRNNGN GPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	31	181	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	31	181	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	31	181	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	31	181	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	31	181	17	168	NAC domain-containing protein 19
3swm_B	1e-53	31	181	17	168	NAC domain-containing protein 19
3swm_C	1e-53	31	181	17	168	NAC domain-containing protein 19
3swm_D	1e-53	31	181	17	168	NAC domain-containing protein 19
3swp_A	1e-53	31	181	17	168	NAC domain-containing protein 19
3swp_B	1e-53	31	181	17	168	NAC domain-containing protein 19
3swp_C	1e-53	31	181	17	168	NAC domain-containing protein 19
3swp_D	1e-53	31	181	17	168	NAC domain-containing protein 19
4dul_A	1e-53	31	181	14	165	NAC domain-containing protein 19
4dul_B	1e-53	31	181	14	165	NAC domain-containing protein 19

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	8e-94	NAC domain containing protein 35