PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9483804g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 37198 Da PI: 10.2721 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++++G g+W++ +++ g+ R++k+c++rw +yl MA_9483804g0010 14 KGPWTPEEDQKLVAYIQEHGHGSWRALPQKAGLLRCGKSCRLRWANYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.3e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++t+E++ +++++++lG++ W+tIa +++ +Rt++++k++w+++l MA_9483804g0010 67 RGKFSTQEEQTIIQLHALLGNR-WSTIATHLP-KRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.608 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.64E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.43 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.85E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGPWTPE EDQKLVAYIQ EHGHGSWRAL PQKAGLLRCG KSCRLRWANY 60 LRPDIKRGKF STQEEQTIIQ LHALLGNRWS TIATHLPKRT DNEIKNYWNT HLKKRLLQMG 120 IDPVTHKPKS ESIMAVGRQS SNGSSNLSHM AQWESARLEA ESRLARESKL RAKGLWSASM 180 RNANVSSDIF SRLRRDSQGF DSDKEELKTR GLNSTGGFEC MKITQKWDKS QDLRLGAKSD 240 QCNSSALGGP FRGYKYNPLE NGQSENRASK TSYVSLLQQA MCPSAQGSKI LYNEAKKLVE 300 NQKNRQANAA ATAYNVHQSH ENCGESKYNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087263 | 0.0 | EF087263.1 Picea sitchensis clone WS02737_G10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007032600.2 | 1e-106 | PREDICTED: myb-related protein Myb4 | ||||
Refseq | XP_019233894.1 | 1e-106 | PREDICTED: transcription factor MYB34-like | ||||
Refseq | XP_021297606.1 | 1e-106 | transcription factor MYB106-like | ||||
Swissprot | Q9LE63 | 1e-102 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A9P0V4 | 0.0 | A9P0V4_PICSI; Uncharacterized protein | ||||
STRING | EOY03526 | 1e-105 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.2 | 1e-103 | myb domain protein 16 |