PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9438016g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 232aa MW: 26689.9 Da PI: 5.8246 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 18 | 61 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ MA_9438016g0010 18 RGNFSPDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNT 61 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.13E-17 | 5 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 7 | 24 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.158 | 13 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-16 | 17 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 18 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-12 | 20 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 25 | 64 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MTLIWFRWVN YLRPNLKRGN FSPDEEDLII RLHKLLGNRW SLIAGRIPGR TDNEVKNYWN 60 TRLNKKAHAT AYIGLNSTRP TEPNIKEPAV SANQEGEREN VIYYPVIEDL NKGSSSSSYP 120 YSGPIAGVSA DIDLWNPLQL NFNIHPPWAY SNFLHDDSNS AFLPKPIVYN QENAHPLSSM 180 FDTENICQDH QMYSVPYSSL PFPEVGVQSD ALTFIPHMDE FADIFNHFQK LY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-14 | 7 | 67 | 48 | 108 | B-MYB |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Gorai.009G040800.1 | 2e-32 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 6e-33 | myb domain protein 82 |