PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9437011g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 107aa MW: 11791 Da PI: 6.7917 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.7e-09 | 20 | 63 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT +l+ +a + + ++ +W+++a+ +g g++++++k ++ MA_9437011g0010 20 NWTFKQNKLFENALAIYDKDtpdRWHKVASVVG-GKSPEEVKRHY 63 8********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.907 | 16 | 71 | IPR017884 | SANT domain |
SMART | SM00717 | 8.5E-9 | 17 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-5 | 19 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.36E-8 | 20 | 67 | No hit | No description |
Pfam | PF00249 | 1.1E-6 | 20 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.48E-12 | 20 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MACQSASSSD KHSSNSTATN WTFKQNKLFE NALAIYDKDT PDRWHKVASV VGGKSPEEVK 60 RHYEILLEDL NSIEAGQVPF PNYISSRPNN REILGGGKPI LGNSDNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-29 | 13 | 86 | 3 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT124278 | 1e-169 | BT124278.1 Picea sitchensis clone WS0472_I11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106182.1 | 1e-35 | PREDICTED: protein RADIALIS-like 6 | ||||
Refseq | XP_013590823.1 | 1e-35 | PREDICTED: protein RADIALIS-like 6 | ||||
Refseq | XP_013652446.1 | 1e-35 | protein RADIALIS-like 6 | ||||
Refseq | XP_013700871.1 | 1e-35 | protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 4e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | D5ADC1 | 2e-72 | D5ADC1_PICSI; Uncharacterized protein | ||||
STRING | Bra015856.1-P | 6e-35 | (Brassica rapa) | ||||
STRING | Bo6g119390.1 | 6e-35 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-35 | RAD-like 6 |