PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_94228g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 23496.3 Da PI: 8.7551 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.7e-19 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + g MA_94228g0010 6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARMMCG 55 69******9.**********8.....334**********************98866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.66E-34 | 5 | 63 | No hit | No description |
SuperFamily | SSF54171 | 4.51E-21 | 6 | 64 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-34 | 6 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.246 | 6 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-40 | 6 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-12 | 6 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MARPQRYRGV RQRHWGSWVS EIRHPLLKTR IWLGTFETAE DAARAYDEAA RMMCGPRART 60 NFPFNPNAPQ SPSSKVLSST LTAKLHRCYM ASMQGPRSGS SKKDSMARAD KNNNIHSGNQ 120 SLTCLRLDNE RSNNIGIWQK KSGSKQSESN WLMKLELDHD QHGNSTLKRE TDDDIAQMIE 180 ELLDCGSLEI CSPIASADSN INSAESMLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-18 | 2 | 67 | 1 | 67 | ATERF1 |
3gcc_A | 4e-18 | 2 | 67 | 1 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF083319 | 0.0 | EF083319.1 Picea sitchensis clone WS0288_A15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890671.1 | 1e-72 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 4e-61 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A9NPV7 | 1e-155 | A9NPV7_PICSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_127.4 | 5e-72 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-50 | ERF family protein |
Publications ? help Back to Top | |||
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