PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_93790g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WRKY | ||||||||
Protein Properties | Length: 174aa MW: 19868.1 Da PI: 7.6659 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.6 | 1.2e-28 | 115 | 171 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYG+K k++++pr+Y+rC+ ++C vkk ver+a+d+ +v++tY g+Hnh MA_93790g0010 115 EDGYKWRKYGKKFLKNNPNPRNYFRCSNSSCDVKKTVERDAHDKGIVITTYLGKHNH 171 8******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.2E-30 | 102 | 173 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-26 | 107 | 174 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.69 | 109 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-31 | 114 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-23 | 115 | 171 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MANFDSRFGH FEAAINAFSN EQSQLLQGPN SLQHMNQGTK PFEPLDFLVL EEEFDHSCTS 60 EDAGDKGLRS DHISSVIQTH EPLQTMSPEI SSRKRKAERA LKYAFLTRSE SDNLEDGYKW 120 RKYGKKFLKN NPNPRNYFRC SNSSCDVKKT VERDAHDKGI VITTYLGKHN HGSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-23 | 107 | 174 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-23 | 107 | 174 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022927982.1 | 4e-34 | probable WRKY transcription factor 51 | ||||
Refseq | XP_023512174.1 | 4e-34 | probable WRKY transcription factor 51 | ||||
Swissprot | Q9C983 | 6e-28 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | A0A0D6R4C9 | 9e-42 | A0A0D6R4C9_ARACU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-30 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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