PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_93487g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 704aa    MW: 79133.4 Da    PI: 5.6267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_93487g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00092951123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C++C+k+F +   L  H+r H
  MA_93487g0010 29 YFCKICSKRFVSGRALGGHMRAH 51
                   78*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0142956IPR007087Zinc finger, C2H2
SuperFamilySSF576673.73E-82951No hitNo description
SMARTSM003550.0272951IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-73151IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SuperFamilySSF576673.73E-8299326No hitNo description
PfamPF139122.0E-9303328IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.427304331IPR007087Zinc finger, C2H2
SMARTSM003550.029304326IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280306326IPR007087Zinc finger, C2H2
PfamPF139125.5E-11460485IPR007087Zinc finger, C2H2
SMARTSM003550.26461483IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993461488IPR007087Zinc finger, C2H2
PROSITE patternPS000280463483IPR007087Zinc finger, C2H2
PfamPF139127.4E-11552577IPR007087Zinc finger, C2H2
SMARTSM003556553575IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280555575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MTSVDILYPR SQAMEVLMKQ EEGEPALSYF CKICSKRFVS GRALGGHMRA HAPASIAADT  60
LTQTEFQKSK RPRDSDHKSV EEKEKDEEGL DSNGSNLMYA LRKNPKRSWR FVDQDYSFLL  120
GEEIDSKPID SSINCDLRGK EFNSWKGLFG DMKYHSETHQ DSSDGNLEES RQQETQDEEE  180
SESDAEIEMD HPSENSSRFD KWMKGKRSKR PRYAIQLNSH EQFGLETNNE EEDMAMCLVM  240
LANGVNTAQK QQVQVGAEDP ASGDLKLPNT GSQPSKCMRK KPKYKKIDGD VVLYADDEVK  300
KGRYKCSTCN KVFHSHQALG GHRASHKSQK HETQDDEEER TESKVEIEIE VDHPSENSSR  360
FDKWTKEKRF KRPRYVLQLN QHEQFGSATN NEEEDMAVCL VMLSSGVNTA QNPQFQVGAV  420
EPESGYLKLP NNGSQLQKLK YKKIDGDAGL NDDDEAKKGR YKCTTCNNVF DSYQALGGHR  480
ASHSKVKGCF TQIEDENERL EEQITDEELI SESDSFHKPR PKERTKDSSV KARDETRTIE  540
PASFSGKKTP RVHECSICHR VFHSGQALGG HKGCHWGRAG ASDTVSTISS NKDTSIQQQM  600
PARVELLDLN LPTSVDDDCD AGNLDNLGGN AVDSQGISYA QTHSTPYLQP GLMGSYPKQG  660
LLLYNNHTDL SKCDEADSKV GKEDGFGRGC DSDFSVRAQP WLQL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ11e-104A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-26C2H2-like zinc finger protein