PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_934202g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 367aa    MW: 40508.9 Da    PI: 9.1957
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_934202g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-29207264359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ k+++ prsYY+C+ a gCpvkk+v+r+ edp +v++tY+geH+h+
  MA_934202g0010 207 DGCQWRKYGQKMTKNNPLPRSYYKCAWApGCPVKKQVQRCVEDPAIVITTYKGEHTHS 264
                     9*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-32194264IPR003657WRKY domain
SuperFamilySSF1182908.37E-27198265IPR003657WRKY domain
PROSITE profilePS5081126.452200266IPR003657WRKY domain
SMARTSM007742.3E-34205265IPR003657WRKY domain
PfamPF031062.0E-25207263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDSSLAELKG LIRNRSQEFT GRQAANIFLD MEEMEGHKNK ITMLVAEINL IDEENRKLKS  60
MLKSMSTKYN DLQKHLLSLV EQRKGVDGNQ ILNPDHQGND VLYARYSNGV VASQDDKYWD  120
CHERGWEKEK KNGKFLDDQQ LPSNKRTMNY MKSAQIENRI NSSIDDSHCC HKKSPNKKHH  180
ALSRGSAAAP KRIVSTRTRS ESSVGGDGCQ WRKYGQKMTK NNPLPRSYYK CAWAPGCPVK  240
KQVQRCVEDP AIVITTYKGE HTHSLSPLVM AAMHGGVSNL LTGGGVNTEN FVAANQFMPC  300
TATISTSTLF PTITFDLTDN RTNSSIIQDS VASIKADPNF TAALAGAIAG SLLCAAAPIQ  360
GVAKSVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-20197265976Probable WRKY transcription factor 4
2lex_A3e-20197265976Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB2KZJ71e-151B2KZJ7_PICAB; WRKY transcription factor 1 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.15e-41WRKY family protein