PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9304g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 313aa    MW: 34379.2 Da    PI: 10.2434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9304g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-20106156155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++++GVr ++ +gr++AeIrdp +   ++r++lg+f+taeeAa+a+++a+++l+g
  MA_9304g0020 106 THFRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDTAEEAARAYDNAARNLRG 156
                   589*******.**********743...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.34E-31106163No hitNo description
PfamPF008472.7E-13106156IPR001471AP2/ERF domain
PROSITE profilePS5103222.471107164IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21107165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-31107164IPR001471AP2/ERF domain
SMARTSM003801.9E-37107170IPR001471AP2/ERF domain
PRINTSPR003676.7E-11108119IPR001471AP2/ERF domain
PRINTSPR003676.7E-11130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLRCSHIFSI VIASVCGRQQ FKRLESVLQV VLLESVLQVF ISGCTRQRAG IDRISSRFVS  60
LCSREGRRDL QAPSAMVVDA MQMARVGVKM EIGGCEEEAS SPVKETHFRG VRKRPWGRFA  120
AEIRDPLKKT RVWLGTFDTA EEAARAYDNA ARNLRGVKAK TNFLLSPHHD DSTKSSRSAA  180
LATLSSRSAV LLSNSLTSAA SVQIQDQWPL RPYFYSNQDP AIVSISCASS VSRSPTDNDR  240
GASSCVSSGS ASRNLAAKSQ TVPNKKKKLL FGIDLMISRN LQQQDDAEIC SSSRRKVPFL  300
LDLNLPPASN DVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20104165264ATERF1
3gcc_A2e-20104165264ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0900151e-67FJ090015.2 Pinus taeda isolate 1412 anonymous locus 2_1437_01 genomic sequence.
GenBankFJ0900161e-67FJ090016.2 Pinus taeda isolate 1403 anonymous locus 2_1437_01 genomic sequence.
GenBankFJ0900201e-67FJ090020.1 Pinus taeda isolate 1413 anonymous locus 2_1437_01 genomic sequence.
GenBankFJ0900221e-67FJ090022.2 Pinus taeda isolate 1408 anonymous locus 2_1437_01 genomic sequence.
GenBankFJ0900241e-67FJ090024.2 Pinus taeda isolate 1399 anonymous locus 2_1437_01 genomic sequence.
GenBankFJ0900261e-67FJ090026.2 Pinus taeda isolate 1406 anonymous locus 2_1437_01 genomic sequence.
GenBankFJ0900301e-67FJ090030.2 Pinus taeda isolate 1405 anonymous locus 2_1437_01 genomic sequence.
GenBankJQ2624381e-67JQ262438.1 Pinus radiata isolate 1415 hypothetical protein (2_1437_01) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMP55e-86A9NMP5_PICSI; Uncharacterized protein
TrEMBLE0ZGZ07e-86E0ZGZ0_PICSI; Ethylene-responsive element binding factor-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.18e-23ERF domain protein 12