PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_928517g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 153aa    MW: 16979.2 Da    PI: 7.1928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_928517g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17148555
             AP2  5 GVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                    GVr+++ +g+++AeIrd       + +r++lg+f tae+Aa a+++a+ k++g
  MA_928517g0010  1 GVRQRP-WGKFAAEIRD----SarQGARVWLGTFNTAEDAALAYDRAAYKMRG 48
                    9*****.**********....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-31162IPR001471AP2/ERF domain
PROSITE profilePS5103221.918156IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21158IPR016177DNA-binding domain
PfamPF008471.9E-12148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-29157IPR001471AP2/ERF domain
CDDcd000182.44E-29156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
GVRQRPWGKF AAEIRDSARQ GARVWLGTFN TAEDAALAYD RAAYKMRGSK ALLNFPLNVA  60
LGNNHTEEKP DSNGENFLQN LTTKKRERSS SDEVDSGREC RVKLEEITRE ADVMSKGMVD  120
ELLCGRLPTP PLTPSGIDMS FSNFLCPGQL MVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-31159563ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-31162869ATERF1
3gcc_A2e-31162869ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1031891e-161BT103189.1 Picea glauca clone GQ0208_B04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304302.12e-31ethylene-responsive transcription factor 2
RefseqXP_022029820.12e-31ethylene-responsive transcription factor 2-like
SwissprotQ9LW482e-31ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLJ7H3857e-93J7H385_PINAR; Transcription factor 3 (Fragment)
STRINGAquca_067_00004.11e-32(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-22ethylene responsive element binding factor 2