PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_927067g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22966.8 Da PI: 6.3411 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.8 | 1.4e-36 | 42 | 140 | 3 | 101 |
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aa k +r+C ++Cvlapyfp ++p+kfa vh +FGasn++++l+++ +e+r+da+ss+vyeA+ar+rdP+yG++gv+ +lqqq++ l+++la++ MA_927067g0010 42 AAGKGSKRRCGDKCVLAPYFPPNDPQKFASVHTVFGASNIIRILQDVGTEHRDDAVSSMVYEARARLRDPIYGCAGVVCQLQQQVCDLQSQLATA 136 56677899**************************************************************************************9 PP DUF260 98 keel 101 ++++ MA_927067g0010 137 QAQI 140 9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.289 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.9E-36 | 42 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MASMTVLSPN IFLANPDLLG ARGDSPPTRG DGRSHHSKSF AAAGKGSKRR CGDKCVLAPY 60 FPPNDPQKFA SVHTVFGASN IIRILQDVGT EHRDDAVSSM VYEARARLRD PIYGCAGVVC 120 QLQQQVCDLQ SQLATAQAQI LNLHCQQENL LPFLTASISS SRKGGETDDY DYNEPLGSSW 180 TDSPASQVTY GEKDINFLLQ EMFMWSSYGK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-35 | 42 | 156 | 13 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-35 | 42 | 156 | 13 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT104771 | 0.0 | BT104771.1 Picea glauca clone GQ02814_K04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256526.1 | 1e-51 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-44 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A1J6HW41 | 2e-50 | A0A1J6HW41_NICAT; Lob domain-containing protein 11 | ||||
TrEMBL | A0A2Z7BKX0 | 1e-50 | A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like | ||||
STRING | XP_009611728.1 | 1e-50 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-38 | LOB domain-containing protein 1 |