PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_92689g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARR-B
Protein Properties Length: 449aa    MW: 49457.1 Da    PI: 9.1823
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_92689g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.3e-28167220155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r++Wt +LH++Fv av+qL G++kA+Pk+i e+m+v+gLt+e+v+SHLQkYRl
  MA_92689g0020 167 KTRIHWTVQLHQQFVTAVNQL-GIDKAVPKRIIEIMGVHGLTRENVASHLQKYRL 220
                    68*******************.********************************8 PP
2Response_reg58.92.8e-202010722109
                    TCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
   Response_reg  22 gyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    ++ +v++++   ea+ +++e++  +Dl++ D+ mp+ dG++ll+ i  +   +lp+i+++a+ge +++ + +  Ga d+l+Kp+ +eel++
  MA_92689g0020  20 RF-KVTTCSRVAEAISMVRERKdhFDLVMSDVYMPNEDGFQLLEIIgLTL--DLPVIMMSANGETSMVMKGITHGACDYLVKPVRMEELRN 107
                    67.99*************777777**********************5554..6************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.4171113IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.0E-141109IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.04E-2520117IPR011006CheY-like superfamily
PfamPF000721.1E-1620108IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.1E-3020132No hitNo description
CDDcd001562.68E-2221112No hitNo description
PROSITE profilePS5129410.247164223IPR017930Myb domain
SuperFamilySSF466891.15E-19165224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-29166225IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24167220IPR006447Myb domain, plants
PfamPF002496.4E-6172219IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MPSYKQAFRG SENSEVNYVR FKVTTCSRVA EAISMVRERK DHFDLVMSDV YMPNEDGFQL  60
LEIIGLTLDL PVIMMSANGE TSMVMKGITH GACDYLVKPV RMEELRNIWQ HVVRRRGREY  120
LREESGDSEH ETSKLVETSE SSSKKRKDSQ NLDHSSEIID DISSLKKTRI HWTVQLHQQF  180
VTAVNQLGID KAVPKRIIEI MGVHGLTREN VASHLQKYRL YLKRLSGSIP APYPVASFQA  240
AEGGKSGGRM HIQPPAKSGA SSPVLTKGLN LGFGASPNST GSFGVGGMDQ GTLKSLEQYR  300
AYEEKRAANR AQVLGGIGIM PSKQSSVGQL PAESKGGLQR MASVDLSLLW KAQRDLASNQ  360
NPAGSHIVDD SADQSFKKAV KLENVQLEPI TVQPASKHSR AHSMSNVLTD FCNIDMPPAG  420
FQRSGTLKEI NELQPMEGIS WEGSTSSRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-19167223157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0916751e-140FJ091675.1 Pinus taeda isolate 2264 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916761e-140FJ091676.1 Pinus taeda isolate 2263 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916771e-140FJ091677.1 Pinus taeda isolate 2265 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916781e-140FJ091678.1 Pinus taeda isolate 2267 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916791e-140FJ091679.1 Pinus taeda isolate 2272 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916801e-140FJ091680.1 Pinus taeda isolate 2274 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916811e-140FJ091681.1 Pinus taeda isolate 2277 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916821e-140FJ091682.1 Pinus taeda isolate 2279 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916831e-140FJ091683.1 Pinus taeda isolate 2269 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916841e-140FJ091684.1 Pinus taeda isolate 2275 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916851e-140FJ091685.1 Pinus taeda isolate 2270 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916861e-140FJ091686.1 Pinus taeda isolate 2280 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916871e-140FJ091687.1 Pinus taeda isolate 2278 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916881e-140FJ091688.1 Pinus taeda isolate 2268 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916891e-140FJ091689.1 Pinus taeda isolate 2271 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916901e-140FJ091690.1 Pinus taeda isolate 2276 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916911e-140FJ091691.1 Pinus taeda isolate 2266 anonymous locus 2_2337_01 genomic sequence.
GenBankFJ0916921e-140FJ091692.1 Pinus taeda isolate 2273 anonymous locus 2_2337_01 genomic sequence.
GenBankJQ2624901e-140JQ262490.1 Pinus radiata isolate 2281 hypothetical protein (2_2337_01) gene, 3' UTR.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388632.11e-108two-component response regulator ORR21-like isoform X1
RefseqXP_024388633.11e-108two-component response regulator ORR21-like isoform X2
RefseqXP_024388634.11e-108two-component response regulator ORR21-like isoform X2
SwissprotB8B3I42e-77ORR22_ORYSI; Two-component response regulator ORR22
TrEMBLA0A0D6R6V81e-166A0A0D6R6V8_ARACU; Two-component response regulator
STRINGPP1S31_291V6.11e-107(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-74response regulator 2