PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_924346g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27946.8 Da PI: 5.6726 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.1 | 7.7e-12 | 28 | 64 | 2 | 42 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42 y GVr +k +g+Wv+eIr+p gk+ +++lg++ t+e+A MA_924346g0010 28 SYIGVRKRK-WGSWVSEIREP---GKQSKIWLGSYSTPEMA 64 699***999.**********8...556*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.77E-23 | 27 | 108 | No hit | No description |
Pfam | PF00847 | 1.9E-6 | 27 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.805 | 28 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-18 | 28 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-10 | 28 | 66 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 28 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 29 | 40 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-8 | 79 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-5 | 79 | 108 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.1E-10 | 89 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSQGADCTSR NSKPETWQKK KSAASYPSYI GVRKRKWGSW VSEIREPGKQ SKIWLGSYST 60 PEMAXXXXXX XXXXXXXXSY STPEMAASAH DVAAFALRGH SALLNFPHFI QYLPRPPTSS 120 PKDIKATAAA AAAKVRLILG QSFEQSRNPD AIINEGARGK GTDESSSIAA NFNPTGQLAG 180 SILSDELTSK QYVGRVHESA SLQMSENEDQ LIMDSASSLM NIDFDLPTSP NAHIDKQVLI 240 SEEEEEFLIW DFPV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 35 | KKKSAASYPSYIGVRKRK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 2e-28 | ERF family protein |