PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_92168g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 425aa    MW: 47208.5 Da    PI: 6.8909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_92168g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13260309154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +r+ h + Er+RR+ +N+ fe+ r+llP++     +K +K++++ + ++YI+ L
  MA_92168g0010 260 QREIHIQSERQRRKGMNHLFERMRSLLPNP----TQKTDKSTTVSEIINYIQAL 309
                    6899*************************9....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-15259319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13259323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-12259314No hitNo description
PfamPF000102.3E-10260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MCPCAHFSHG SSKPMGFLAL ISMRQPSKPI SRYCRSDVLY VTKTEKSMLN NMLHFQSQLA  60
AGPKLEPLST VNHPDDPLRS VLNISSSYQS PWMNPSCFSS PESVPFDEKA LELSEMDTLV  120
HQMGDIESWG NLDQVHGCVR PLNAASMQAC SIVSDPQLEI LNVFLKKHNP AEDVHVNLNP  180
DSDFLPRVRS ANVLQMDAVV QQDAFGSILS DEQEPMENKS KDHMLKVPAK RSSGTRPAQL  240
RPTKRGAAAA PQQDVSGISQ REIHIQSERQ RRKGMNHLFE RMRSLLPNPT QKTDKSTTVS  300
EIINYIQALH QNLEDLNKKR AKMLPSPRGG TVHVKTEPTS AESIQSECTG SEDSLPVSSE  360
EECTRQTPHV TLHFNGNDIY VTVSCLNKAN LLAAIIFVVE DHNLQVISAN FSATDTVAFH  420
CLHVK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1152770.0BT115277.1 Picea glauca clone GQ03613_E07 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-11bHLH family protein