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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MA_9207013g0020 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | bHLH | ||||||||
| Protein Properties | Length: 199aa MW: 22711.5 Da PI: 5.0987 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 15.4 | 3.3e-05 | 130 | 159 | 5 | 36 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS CS
HLH 5 hnerErrRRdriNsafeeLrellPk.askapsk 36
h + Er+RR ++ + ++ Lr l+P + +++
MA_9207013g0020 130 HVIGERKRRGQMSNILSALRALVPVkP---KAG 159
7778********************955...433 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 10.144 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.75E-11 | 127 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.1E-9 | 129 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 5.70E-6 | 129 | 179 | No hit | No description |
| SMART | SM00353 | 0.001 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 199 aa Download sequence Send to blast |
MRSPRSSPKL FLSDTYEKSM DTVDRTTIDD YEVCELDFFD PMTNCQAESF ESAAADYPCY 60 CLPSQSWNDF ASSDLLIHSQ MAIDNAHPSV QSEDSIITVS TEGINSNWED LRFNQKRNSA 120 FVEWKLAIHH VIGERKRRGQ MSNILSALRA LVPVKPKAGR VTVILETKDY VIHLNKHIQQ 180 LEQRNRELEA LLSEISSVT |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP12363 | 3 | 4 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G09820.1 | 1e-07 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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