PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_917988g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 275aa    MW: 31070.5 Da    PI: 8.3346
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_917988g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.6e-06253271927
                     GGGTS--TTTTT-SS-SSS CS
         zf-CCCH   9 fartGtCkyGdrCkFaHgp 27 
                     f r G Ck+G+rC+F Hg+
  MA_917988g0010 253 FERQGRCKFGGRCRFRHGQ 271
                     99***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541971.15E-7110210IPR011146HIT-like domain
PROSITE profilePS5010313.901244272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.53E-6245272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4248272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MADKQEEAGA NPLPTQLVNF TDVRPGKFME LKPAVNSGRA FCDFVETTPK ETVIRFFREV  60
IDHIERARGI RNYHLKVKSS KPGAGFVIHV FYGEDREGPE KIEPGSCISC HDDALLFPGV  120
EGSVLAGECV LAEFSEDQPY VQCSMDAKAR AGFIVTPVRH VETMGGLEDE ELYCLWRVGV  180
KALRSEGLQP VSMIVNHGSY RNLPHLHLKI WVDDGVHRQA RLKWSDDRKR VWARLERLTS  240
SSLPKKRAFC LGFERQGRCK FGGRCRFRHG QEGAN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0203300.0JQ020330.1 Pinus taeda isolate 2280 anonymous locus 2_3320_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AA232e-71D5AA23_PICSI; Uncharacterized protein