PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_917739g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 430aa    MW: 46601.7 Da    PI: 5.5986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_917739g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.00022370412855
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     r + R +++++a++ Lr+++P+         ++ a++Le A +++ksLq
  MA_917739g0010 370 RRKLRKEKVKKAINLLRSIVPEgH------SMDTAAVLEVASQHLKSLQ 412
                     5688999***************55......79****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.652362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-7368420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-4368416No hitNo description
Gene3DG3DSA:4.10.280.109.0E-6372423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MESPDIQVSC SNIPSPSLEH TGLESKLPWT VQESCGLPIL SGMEHLPQSG QHLGAFEVNA  60
FQQRAHLRSE QCVSASAYPA PPRCPEQLKS VDGNPRAHSA NSAGLAAGFT GSGVRVIVHP  120
SLVYEFPNLL PDSAKGLDKI NVHNRVPQKE SISQMPSVYN STDRGTGLLA YREHMAPAFT  180
ALQGIRKRRW LSAEAAGNGF VACSKQEETG SQMSCNGSSR GGYQSQSHED TRDLEALLGS  240
DEEEDDSTGH TPSEAITNDQ QSGTQDEAHI SNGIPTKKRR CECMEFGEQE VDFIPTAIQE  300
TAVLNGKCSS DGVCFPPVAS QESGIQLECC NTVKDSDYRD EQFCDYSTDN MTGNGSSNNS  360
ASKVGQPSSR RKLRKEKVKK AINLLRSIVP EGHSMDTAAV LEVASQHLKS LQLKLERLEA  420
NQNDKTLSKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0713100.0BT071310.1 Picea sitchensis clone WS02824_A22 unknown mRNA.
GenBankEF6777590.0EF677759.1 Picea sitchensis clone WS02774_I09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSI60.0C0PSI6_PICSI; Uncharacterized protein