PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_91466g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 450aa    MW: 48810.8 Da    PI: 7.5222
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_91466g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35631552103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll++i
  MA_91466g0010  63 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCEI 149
                    9*****************************************************************99.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+k++
  MA_91466g0010 150 HRRKTS 155
                    ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-3854147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6059152IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-3460152IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-196386IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3163152IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-19101113IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340102126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-19114126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
VIAIDNYPYA QIDYRGDPDI PLPPDSSYGD IGRGSSRGYV ATSDSCEGML LSVESHKSVP  60
APFLTKTYQL VDDPATDHIV SWGEDDTTFV VWRPPEFARD LLPNYFKHNN FSSFVRQLNT  120
YGFRKIVPDR WEFANEFFRK GEKHLLCEIH RRKTSSQAVP SSGHGMPMSS SISPTTSDDQ  180
DWSPLSTPLS SPRGLAAATG GGGGGGSLMV GCSGGGTAAM HASAAAAAAA VSALSDDNER  240
LRRNNSMLLS ELTHMRKLYN DIIFFVQHHV RIPPPPPHQG GSSSSAMNMN MNRLKYHQQP  300
TANPNVVPLL LEAPTVPSTP RIADARDHRI MNPNREVVEI SSSSPRSQLF GLGTARASSI  360
SFVDTKLKEM AAASSSPSTS SVTVADQDGI KSPPKLFGVP LHGKKRLHPQ WDVVDQAETN  420
SLQEQYRNII VAPSKALKTD LALHLAPSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-22591547112Heat shock factor protein 1
5hdn_A2e-22591547112Heat shock factor protein 1
5hdn_B2e-22591547112Heat shock factor protein 1
5hdn_C2e-22591547112Heat shock factor protein 1
5hdn_D2e-22591547112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1066940.0BT106694.1 Picea glauca clone GQ03008_E03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112180.11e-112heat stress transcription factor B-4
SwissprotQ9C6356e-87HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLW9SA361e-110W9SA36_9ROSA; Heat stress transcription factor B-4
STRINGXP_010112180.11e-111(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-67heat shock transcription factor B4