PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_910870g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 348aa    MW: 39663.1 Da    PI: 9.087
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_910870g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-06108130527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C +f r G C  Gd C+F+H+p
  MA_910870g0010 108 ICFDFVRRGRCDKGDDCRFSHDP 130
                     5778999**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7513563IPR000571Zinc finger, CCCH-type
SMARTSM003560.0333662IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-43963IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-53965IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.4466795IPR000571Zinc finger, CCCH-type
SMARTSM00356446994IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187103131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6105131IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4105130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5106130IPR000571Zinc finger, CCCH-type
PfamPF046772.6E-31140254IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541979.36E-9140249IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.101.2E-5149250IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MPASMMSVSE LSARPSNSTP CPYDVSKKWQ RKGTEDGKRL CFQFLSSSSC SRGESCKFRH  60
DTDNNNPFLK GACFDFISKG KYERGAECKF HHSSDDGGGS IDLLPTGICF DFVRRGRCDK  120
GDDCRFSHDP DAGKKGRNAM SNTHQPYWFC LSSSNLDTHL IVSVGDNFYH ALAKGPLVEE  180
HVLIVPIEHL PSTISLPSDS DGELQKFKHA LKRYSRKHGN EMIVFERYLN PREANHAHLQ  240
VVPIPLSKAS TVWSEFVMAG KKLGFEFDVI RPAGENDIDV RMSLKKHSEK QVKLHNAKLS  300
DKNVELYDKS QEVKQRHEKI IERNKLLMKE NASLYRKLRL FRLQLKEQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399683.17e-89zinc finger CCCH domain-containing protein 64-like isoform X2
RefseqXP_024399684.14e-90zinc finger CCCH domain-containing protein 59-like isoform X3
TrEMBLA0A2K1J8J02e-87A0A2K1J8J0_PHYPA; Uncharacterized protein
STRINGPP1S15_97V6.11e-87(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP534877