PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_908g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 34232.1 Da PI: 8.5726 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.5e-10 | 19 | 64 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e +++ +a + + ++ +W+++a++++ g+t+ +++ ++ + MA_908g0010 19 VWTLEQNKRFENALADFDKDtpdRWDKVAARLP-GKTATDVRKHYED 64 6********************************.***********76 PP | |||||||
2 | Myb_DNA-binding | 37.9 | 4e-12 | 127 | 171 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + + G+g W++I+r + Rt+ q+ s+ qky MA_908g0010 127 PWTEEEHRQFLMGLHNIGKGYWRSISRNFVVSRTPTQVASHAQKY 171 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.2E-8 | 16 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 18 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-11 | 18 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-7 | 19 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-7 | 20 | 66 | No hit | No description |
PROSITE profile | PS50090 | 6.911 | 20 | 66 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 16.719 | 120 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-15 | 121 | 174 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-16 | 123 | 174 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 124 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-8 | 124 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-6 | 127 | 172 | No hit | No description |
Pfam | PF00249 | 6.1E-10 | 127 | 171 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MWEMDLPSQG TSLSSSGSVW TLEQNKRFEN ALADFDKDTP DRWDKVAARL PGKTATDVRK 60 HYEDLVDDVT CIEAGCVALP TYSNSSCTLE WIEGKSGDMH GLKQQFGSGG RGSSTKPSEQ 120 ERKKGVPWTE EEHRQFLMGL HNIGKGYWRS ISRNFVVSRT PTQVASHAQK YFSRLCLDNK 180 NKRRSSIHDI TTVNGTDRRS FPLPQASTRQ TNSPPTPAEI NQSPCLTYPS PILRGPLISS 240 LGSQADGNPL FSSHYPLSLY TQRGFGGHSP RTFIPDSSIA SGVHYRDVEL STASYHRCTD 300 AAFSQLKGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-17 | 12 | 85 | 3 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107022 | 0.0 | BT107022.1 Picea glauca clone GQ03101_N16 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429310.1 | 1e-81 | transcription factor DIVARICATA | ||||
Refseq | XP_006480971.1 | 2e-81 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 6e-75 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0D6R2Q1 | 7e-89 | A0A0D6R2Q1_ARACU; Uncharacterized protein | ||||
STRING | XP_006480971.1 | 6e-81 | (Citrus sinensis) | ||||
STRING | XP_006429310.1 | 5e-81 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-75 | MYB family protein |
Publications ? help Back to Top | |||
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