PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_904750g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 28680.8 Da PI: 4.2127 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8.2e-19 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+eIr+p + r +r +lg+f+ta+eAa a++ a+++l+g MA_904750g0010 33 CNYRGVRQRT-WGKWVSEIREP---N-RgARLWLGTFDTAQEAALAYDDAARALYG 83 56*****999.**********8...3.35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-13 | 33 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.31E-33 | 33 | 93 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-21 | 34 | 93 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-31 | 34 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.891 | 34 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MALIGGATKQ IRKTRGSKKG CMKGKGGPEN ALCNYRGVRQ RTWGKWVSEI REPNRGARLW 60 LGTFDTAQEA ALAYDDAARA LYGSEANLNL PDSIKKPTGF QIQPACNNNM QSDVFTDHVD 120 GSVDTIPDSK DQQVSLSTAN EIRVEDIPAM INGSTSINQP LDELLSVDSH ESNFMEGLEL 180 ESISSISNSC IIHDQISSLD FIDENDSSQI FNGDVAWLPL DLPPLNDDAT TSFELPEQES 240 DTVKATLDDH ILNIQNNWLP L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 34 | 91 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106200.1 | 2e-44 | PREDICTED: dehydration-responsive element-binding protein 2D | ||||
Refseq | XP_013652440.1 | 2e-44 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A087HIN2 | 9e-44 | A0A087HIN2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HIN2 | 1e-44 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 6e-27 | ERF family protein |