PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_90272g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 412aa    MW: 45538 Da    PI: 6.6091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_90272g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10227274455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MA_90272g0010 227 SHSLAERVRREKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 274
                    8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-17221292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.35E-11221278No hitNo description
Gene3DG3DSA:4.10.280.102.8E-17223291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7227274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10229279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MALEGNGNRV FDGLTNFNKV SANSAPNYQT SSASWHSGIA SCALDMNRQP SLPAAAEGSF  60
RSLNSSYSFD DLMPFSVHGL DNVDRGTHLQ DVKLVSEHSP RNFFSSIRVQ QPGIEAKCNA  120
SGEESSSSDQ STGGRKRRIL PNGKARSEAL AVASPGENNT VNESKSKRAK SVEAKKKTDD  180
SNPDAEQAIH TGKPEVNPKQ SEQSAKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS  240
ERMKLLQDLV PGCNKITGKA VMLDEIINYV QSLQRQVEFL SMKLEAVNPR LDFNMEGVLT  300
KDMLEPLDMT FTSDTAMVYP QFHQPEWAAM QAGVSCEMEE QCMGNGGEVA LRRIMNENFP  360
RIEGYGDAKI SNVWDDELQN VVRLGVGKNI QTPFTSQSLL GPFPIRRTNI EH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848450.11e-82transcription factor bHLH78
TrEMBLD5AB870.0D5AB87_PICSI; Uncharacterized protein
STRINGERN100314e-82(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-60bHLH family protein