PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_90272g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 412aa MW: 45538 Da PI: 6.6091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.8e-10 | 227 | 274 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq MA_90272g0010 227 SHSLAERVRREKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 274 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-17 | 221 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.35E-11 | 221 | 278 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-17 | 223 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.796 | 223 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-7 | 227 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 229 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MALEGNGNRV FDGLTNFNKV SANSAPNYQT SSASWHSGIA SCALDMNRQP SLPAAAEGSF 60 RSLNSSYSFD DLMPFSVHGL DNVDRGTHLQ DVKLVSEHSP RNFFSSIRVQ QPGIEAKCNA 120 SGEESSSSDQ STGGRKRRIL PNGKARSEAL AVASPGENNT VNESKSKRAK SVEAKKKTDD 180 SNPDAEQAIH TGKPEVNPKQ SEQSAKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS 240 ERMKLLQDLV PGCNKITGKA VMLDEIINYV QSLQRQVEFL SMKLEAVNPR LDFNMEGVLT 300 KDMLEPLDMT FTSDTAMVYP QFHQPEWAAM QAGVSCEMEE QCMGNGGEVA LRRIMNENFP 360 RIEGYGDAKI SNVWDDELQN VVRLGVGKNI QTPFTSQSLL GPFPIRRTNI EH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00376 | DAP | Transfer from AT3G23690 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006848450.1 | 1e-82 | transcription factor bHLH78 | ||||
TrEMBL | D5AB87 | 0.0 | D5AB87_PICSI; Uncharacterized protein | ||||
STRING | ERN10031 | 4e-82 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 1e-60 | bHLH family protein |