PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_902082g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18836.2 Da PI: 4.8088 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.6 | 2.7e-40 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCkv+++kC+++Cvlapyfp+++p kf vh lFG+ +v+kll++lp e+r+da+sslvyeA+ar+ dPv+G+vgvi++lq++le+++ +la MA_902082g0010 10 ACAACKVQKKKCSEKCVLAPYFPQNDPDKFLLVHGLFGNGHVVKLLQDLPAEQRSDAVSSLVYEARARVADPVHGCVGVINDLQKKLEEVHLQLA 104 7********************************************************************************************** PP DUF260 96 llkee 100 +++e+ MA_902082g0010 105 STQEK 109 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.878 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-38 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSQVSKAEPA CAACKVQKKK CSEKCVLAPY FPQNDPDKFL LVHGLFGNGH VVKLLQDLPA 60 EQRSDAVSSL VYEARARVAD PVHGCVGVIN DLQKKLEEVH LQLASTQEKL DNISMQHSNM 120 LITLINTGYH QVWDPNFYNS SPQESQDTQY TNSSVLDDEV DNLDFWET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-32 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-32 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 4e-62 | B8LQI9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-37 | LOB domain-containing protein 1 |