PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_8992661g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HSF | ||||||||
Protein Properties | Length: 228aa MW: 25695.3 Da PI: 9.8127 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.1 | 7.9e-35 | 26 | 118 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+y++++d+++++++sw +n+n+fvv+ ++ef+ +vLp+yF h+nf+SFvRQLn+YgF+k+ + + eF+++ F+kg+k+ll+ MA_8992661g0010 26 FLVKTYRLVDDPSTDHIVSWGDNNNTFVVWRPKEFSASVLPSYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFANELFRKGQKHLLS 110 9***************************************************************9988.........67*************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i+r+k + MA_8992661g0010 111 HIQRRKPS 118 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.0E-53 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.1E-37 | 24 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.02E-33 | 24 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.2E-18 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-30 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGEGGLVRDA RGGVARDAGR LVAAPFLVKT YRLVDDPSTD HIVSWGDNNN TFVVWRPKEF 60 SASVLPSYFN HTNFSSFVRQ LNTYGFRKIV RGRCEFANEL FRKGQKHLLS HIQRRKPSAS 120 PVQMDYGNYS LFPPILSTQH SDVSIEAPSL SEENETLRRN NSLLLSEISR LKNICSRDIT 180 LFILQNTIDP PVVDKDRKIH NAGPCSSMKD VAKEISMSPP KLFGVPLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-23 | 1 | 115 | 3 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 1 | 115 | 3 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 1 | 115 | 3 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT112587 | 0.0 | BT112587.1 Picea glauca clone GQ03318_A02 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298460.1 | 9e-61 | heat stress transcription factor B-4b | ||||
Swissprot | Q9C635 | 2e-56 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | H9WUJ6 | 4e-93 | H9WUJ6_PINTA; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0001s28040.1 | 4e-60 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 7e-59 | heat shock transcription factor B4 |