PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_89624g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 393aa MW: 44016.2 Da PI: 6.984 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 149 | 192 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+++l+ a++++G++ W+ Iar ++ gRt++ +k++w+ MA_89624g0010 149 RKPFSEEEEDRLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 192 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 0.00361 | 121 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-14 | 121 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.4E-25 | 122 | 201 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.064 | 123 | 143 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 26.661 | 144 | 198 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 148 | 196 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 149 | 191 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.78E-12 | 151 | 191 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 155 | 198 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MCLYQVEEGP QWLQGSCNMV TPPKPLTFDL FGKDDVVELE KYGNPFAIYH VSAPSPVSSL 60 DCLPLTFDLF QKDDVVELEK YGNGDAACNS SPHNDDDTNG ENCYGQDHYM KANDTMGSEE 120 NLIAEKLQGR SGKSCRLRWF NQLDPRINRK PFSEEEEDRL LAAHRLYGNK WAMIARLFPG 180 RTDNAVKNHW HVIMARKLRE QSSAYRRRKP QVVQQRREKS DACINEPNSH YQFTSIPGGS 240 SSSINFLQPS RGFSSLSSAD FSLASSHTRI PSYYAIKSAS AFGAVQSLDY FSGAKGTANL 300 PVERRSLLDK FPIPEQQAAN GKACFHFMPP AINATDPKLG LERRYMDAEK ASSVLSATDS 360 SQEYSKSWIF NKSAEKDIST NRPFIDFLGV GAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 122 | 198 | 32 | 108 | B-MYB |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT119753 | 0.0 | BT119753.1 Picea glauca clone GQ04109_K05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A222UAI8 | 3e-85 | A0A222UAI8_GINBI; R2R3MYB19 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-51 | myb domain protein 105 |